Table of Contents

A list of the pages contained within each subtopic of the Learning Initiative in Neuroscience: Neural Circuit Interrogation.

View the list of resources by type below.

Circuit Mapping/Networks:

• Shining a Light (Microscope) Onto the Brain’s Connections
• Revealing a Sexually Differentiated Neural Circuit for Sensing Social Stimuli
• Meet-the-Expert: Creating a Multimodal Brain Cell Type Atlas With Hongkui Zeng, PhD
• Circuit Mapping/Networks Journal Article

Microscopy:

• Bringing Two-Photon Microscopy Into Monkeys
• Shining a Light (Microscope) Onto the Brain’s Connections
• Widening the View of Two-Photon Microscopy
• Seeing Neuronal Activity Simultaneously in Three Dimensions
• Synapses in the Human Transentorhinal Cortex
• Studying Spinal Cord Axons with Better Transparency
• Fast, Focused, and Far-Reaching: A New 3D, Two-Photon Imaging Technique
• Microscopy Journal Articles

Neural Connectivity and Connectomics:

• Neuroinformatics in the Age of Big Data: Working with the Right Tools
• Viral Connectomics: Tracing a Monosynaptic Path with a Glycoprotein-Deleted Rabies Viruses
• Exploring Individual Brain Connectomes with Topological Data Analysis in ADHD
• Neural Connectivity and Connectomics Journal Articles

Neuroimaging:

• Data Sharing Principles to Promote Open Science
• Short Course: Introduction to Neuroinformatics
• Building a Program of Interdisciplinary Research that Bridges Neuroscience and Education
• The Smell Network: The Brain’s Architecture for Human Olfaction
• Neuroimaging Journal Articles

Optogenetics:

• Optogenetics Training Series
• Next Generation Optogenetics Tools and Applications Lightning Talks
• Analyzing Circuits with Extracellular Recording ad Optogenetics
• New Approach for Investigating Neuropathic Pain by Optogenetic Stimulation of Aβ Fibers
• Optogenetics Journal Articles

Voltage-sensitive Dye Imaging and Chemogenetics:

• In Vivo Functional Bioluminescence Brain Imaging Highlights Learning and Memory Process
• Voltage-sensitive Dye and Chemogenetics Journal Articles

Calcium Imaging:

• Extending the Range of Cellular Imaging: Sodium and Calcium at the Same Time
• Genetically Encoded Calcium Indicators Monitor Cell Communication
• Dopamine Enhances Sensory Perception in Zebrafish
• Transcriptional Regulation of an Endoplasmic Reticulum Calcium Sensor
• Calcium Imaging Journal Articles

Chemogenetics:

• How Does the Medial Prefrontal Cortexr Regulate the Strength of Memory Encoding?
• Chemogenetics Journal Articles

Fos Activation

• Methyl Supplementation and DNA Methylation Providing: Building Blocks to Reverse Cocaine Addiction
• Fos Activation Journal Articles

Resources by Type

Neuronline Articles

• Revealing a Sexually Differentiated Neural Circuit for Sensing Social Stimuli
• Synapses in the Human Transentorhinal Cortex
• Studying Spinal Cord Axons with Better Transparency
• Predicting Future Diagnosis from Brain Data Alone
• In Vivo Functional Bioluminescence Brain Imaging Highlights Learning and Memory Process
• Dopamine Enhances Sensory Perception in Zebrafish
• Extending the Range of Cellular Imaging: Sodium and Calcium at the Same Time
• Transcriptional Regulation of an Endoplasmic Reticulum Calcium Sensor
• How Does the Medial Prefrontal Cortex Regulate the Strength of Memory Encoding?
• Methyl Supplementation and DNA Methylation: Providing More Building Blocks to Reverse Cocaine Addiction
• Exploring Individual Brain Connectomes with Topological Data Analysis in ADHD
• The Smell Network: The Brain’s Architecture for Human Olfaction

Journal Article Links

• Circuit Mapping/Networks Journal Articles
• Microscopy Journal Articles
• Neural Connectivity and Connectomics Journal Articles
• Neuroimaging Journal Articles
• Optogenetics Journal Articles
• Voltage-sensitive Dye and Chemogenetics Journal Articles
• Calcium Imaging Journal Articles
• Chemogenetics Journal Articles
• Fos Activation Journal Articles

SfN Short Courses

• Shining a Light (Microscope) Onto the Brain’s Connections
• Bringing Two-Photon Microscopy Into Monkeys
• Shining a Light (Microscope) Onto the Brain’s Connections
• Widening the View of Two-Photon Microscopy
• Seeing Neuronal Activity Simultaneously in Three Dimensions
• Fast, Focused, and Far-Reaching: A New 3D, Two-Photon Imaging Technique
• Analyzing Circuits With Extracellular Recording and Optogenetics
• New Approach for Investigating Neuropathic Pain by Optogenetic Stimulation of Aβ Fibers
• Genetically Encoded Calcium Indicators Monitor Cell Communication

Videos

• Neuroinformatics in the Age of Big Data: Working with the Right Tools
• Data Sharing Principles to Promote Open Science

Training Series

• Short Course: Introduction to Neuroinformatics

Podcasts

• Viral Connectomics: Tracing a Monosynaptic Path With a Glycoprotein-Deleted Rabies Viruses
• Building a Program of Interdisciplinary Research That Bridges Neuroscience and Education

Webinar

• Meet-the-Expert: Creating a Multimodal Brain Cell Type Atlas With Hongkui Zeng, PhD